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The manual for the converters (Transition Networks, model E-100BTX-FX-05) describes the dip switch options. I've cut and pasted some of the manual to the end of this entry. It seems that we should disable the pause control, link pass-through and far-end fault options on both converters. Link pass-through and far-end fault options can cause a copper interface to be disabled if a fault is detected on the remote copper interface or on the fiber. These options appear to be for a building network with good network monitoring equipment. Perhaps a power outage, cable disconnect, or powering down a network switch could cause the converters to think there is a fault in the copper line, and then the copper interfaces would be disabled. The manual says nothing about whether the interfaces are automatically brought up if the fault disappears.

Pause control should be enabled if all devices attached to the media converters have it. I don't know if the ethernet switches have it, so we'll disable it.

Dip switch 1 is auto-negotiation of speed and duplex and that was left enabled=UP. Set switches 2, 3 and 4 DOWN on both converters,
to disable pause control, link pass-through and far-end fault.

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Code Block
Pause Control
The Pause feature can improve network performance by allowing one end of
the link to signal the other to discontinue frame transmission for a set period
of time to relieve buffer congestion.
NOTE: If the Pause feature is present on ALL network devices attached to the
media converter(s), enable the Pause feature on the media converter(s).
Otherwise, disable the Pause feature

Link Pass-Through
The Link Pass-Through feature allows the media converter to monitor both the
fiber and copper RX (receive) ports for loss of signal. In the event of a loss of
an RX signal (1), the media converter will automatically disable the TX
(transmit) signal (2), thus, “passing through” the link loss (3). The far-end
device is automatically notified of the link loss (4), which prevents the loss of
valuable data unknowingly transmitted over an invalid link.

              
near-end <-1-> local media -2->  remote media <-3-> far end
device         converter   <-4-  converter          device

original fault   2 local media cvtr     remote disables
on copper link   sends a loss signal      ethernet device
                 over fiber

Far-End Fault
When a fault occurs on an incoming fiber link (1), the media converter
transmits a Far-End Fault signal on the outgoing fiber link (2). In addition the
Far-End Fault signal also activates the Link Pass-Through, which, in turn,
disables the link on the copper portion of the network (3) and (4).

                      1 original
                      fault on fiber
near-end <-4-> media     -1X>  media converter <-3-> far end
device         converter <-2-  converter             device
               A               B

media converter                               media converter
A disables copper                             B disables the copper,
link                                          sends far-end fault
                                              signal to A over fiber.