ssh into modeling2.acom.ucar.edu in two terminal windows.

Preprocessor

In the first window, start a local preprocessor web service with:

npm install express helmet
git clone https://github.com/NCAR/MechanismToCode.git
cd MechanismToCode
node combined.js

You should see: app listening on :::3000

Build and run MusicBox

In the second window, build and run the model.

Get the code

To get the source code, in the second window run:

git clone https://github.com/NCAR/MusicBox.git
cd MusicBox
./manage_externals/checkout_externals

Grab a mechanism and build the model

To build a model for mechanism 272, from the root MusicBox/ folder in window 2, run:

cd Mechanism_collection
python3 get_tag.py -tag_id 272
python3 preprocess_tag.py -mechanism_source_path configured_tags/272 -preprocessor localhost:3000
python3 stage_tag.py -source_dir_kinetics configured_tags/272
cd ../MusicBox_host
mkdir build
cd build
export PATH="/opt/local/bin:$PATH"
export LD_LIBRARY_PATH="/opt/local/lib64:/opt/local/lib"
cmake3 -D CMAKE_CXX_COMPILER="/opt/local/bin/g++" \
       -D CMAKE_C_COMPILER="/opt/local/bin/gcc" \
       -D CMAKE_Fortran_COMPILER="/opt/local/bin/gfortran" \
       -D NETCDF_LIBRARIES_C="/opt/local/lib/libnetcdf.so" \
       -D NETCDF_LIBRARIES_F90="/opt/local/lib/libnetcdff.so" \
       -D NETCDF_INCLUDES_F90="/opt/local/include" \
       -D NETCDF_INCLUDES="/opt/local/include" \
       ../src
make

Run the model

Run the model from the MusicBox/MusicBox_host/build/ folder with:

./MusicBox

Stop the preprocessor web server

In the first window, stop with web server with ctrl-c


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